PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017218
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 279aa    MW: 30520.4 Da    PI: 6.6163
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-5176PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.15e-3241081100
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++
  Lsa017218   4 SCNGCRVLRKGCSDNCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQTAVEAV 103
                6*************************************************************************************************99 PP

     DUF260  96 llkee 100
                l++++
  Lsa017218 104 LQGSP 108
                98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.6E-921267IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.033109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQTAV EAVLQGSPIT QIASDTAETN  120
KGPPFKAYDI RHISKDENSG AGSSELHRIR TRCRFKRSSA KGKASRVWIG SSDQEVSAQN  180
EHNNEFSSHG SALSHQSEAA HVVEDDNREM VEESLVSVET PLMSNKQAET EAAELDVKVE  240
LELTLGYEPV DKSKVKEATI AAAPKNSDAG VELRLDCPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.11e-119PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8862e-99LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A103Y0691e-162A0A103Y069_CYNCS; Lateral organ boundaries domain-containing protein
STRINGGLYMA18G53440.11e-110(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-100LOB domain-containing protein 41